According to Au7o's research across NHTSA recalls, manufacturer TSBs, and owner forum reports, the 1999 Toyota MR2 has 7 documented known issues, with 4 rated critical. The most serious are Structural Rust: Sills, Rear Arches, and Rear Subframe ('Cancer Bars') ($600-$5,000 repair), Underbody Coolant Pipe Corrosion (Mid-Engine Cooling Lines) ($500-$2,200 repair), Snap Oversteer Under Lift-Off (SW20) ($300-$1,500 repair) and 3S-GTE Turbo Head Gasket Failure Under Boost ($1,500-$3,800 repair). Across all issues with published estimates, repair costs range from $50 to $5,000. DIY maintenance guides at au7o.io.
On the 1990-1999 Toyota MR2, the SW20 body rusts in predictable, structurally important places. Sound-deadening foam packed into the rear quarters behind the seats traps moisture and rots the rear sills from the inside. The rear wheel arches and inner arches corrode, especially where road salt isn't washed off. The stiffening/brace bars under the car near the engine bay are so rust-prone from poor factory paint coverage that the community nicknamed them 'cancer bars.' The rear subframe/crossmember also corrodes. Because these are load-bearing areas, corrosion here hits both safety and resale value hard, and repairs can be expensive welding jobs. This is a top three pre-purchase priority alongside turbo and cooling-system health.
Common Symptoms
Bubbling paint or perforation on rear sills and wheel arches
Put the car on a lift and inspect sills, arches, floors, rear subframe/crossmember, and the underbody brace bars. Remove interior side panels to check the foam-packed rear sills from inside the cabin. Cut out and re-weld rusted sections, treat and repaint; replace corroded brace bars/subframe hardware (stainless aftermarket replacement bars exist). Preventatively, remove trapped foam, apply cavity wax/underseal, and wash off road salt.
What you need to fix it
Only diagnosis- and fitment-reviewed repair parts are linked here.
Toyota OEM SW20 rear lower engine-bay chassis brace pair
replace removable rear braces only after their mounts and surrounding structure pass inspection or are repaired Fitment/availability: 1991-1995 Toyota MR2 SW20 rear lower engine-bay brace set; confirm mounting metal and hardware conditio…
post-repair corrosion prevention, not structural restoration Fitment/availability: Renewable cavity and underbody barrier for structurally sound or professionally repaired SW20 metal Fitment/availability: Live direct product page showing…
On the 1990-1999 Toyota MR2, two age-related annoyances plague SW20s. First, on glass T-bar (T-top) cars the roof seals leak with age: the rubber shrinks and hardens, so the seals on the body and the T-top panels pull apart at the vertical join near the door-glass opening, letting water into the cabin (which in turn feeds the rear-sill rust problem). Documented leak points include the rear of the T-bar, the front of the T-bar, and the A-pillar seal. OEM replacement seals are available but expensive and fiddly to fit correctly. Second, the pop-up headlights are raised by small electric motors that fail with age; a very common specific cause is an open diode in the motor's limit-switch circuit, leaving a headlight stuck up or down. Both are classic buyer's-guide checkpoints.
Common Symptoms
Water leaking into cabin from T-bar roof, worse in rain/car wash
Damp footwells or rear quarters feeding sill rust
Wind noise from shrunken roof seals
Pop-up headlight stuck up or down / won't cycle
One headlight lagging or not raising
How to Fix
For T-bar leaks, first try reconditioning: clean the seals and apply a rubber-safe silicone grease to re-seat them, or build up the worn mating surface with black silicone to bring the surfaces back together; replace the seals only if reconditioning fails, as OEM seals are costly. For headlight motors, test the limit-switch diodes (they read differently when a headlight won't cycle); the inexpensive fix is often soldering in a replacement diode, otherwise clean/grease the connector or replace the controller/motor.
On the 1990-1999 Toyota MR2 3S-GTE (2.0L turbo), the turbocharged 3S-GTE is prone to head gasket failure, particularly on cars run at elevated boost or with a neglected cooling system. The engine's design works against it: narrow head-gasket 'lands' around the combustion chambers, large coolant jackets, a factory paper/composite gasket, and torque-to-yield (TTY) head bolts that stretch over time. Heat, age, and boost combine to let combustion pressure breach the gasket. A very common real-world pattern is a car that idles and cruises around town at a perfect temperature but blows coolant out the overflow and overheats during sustained hard boost. The naturally-aspirated 5S-FE and 3S-GE are far less affected; this is chiefly a turbo (3S-GTE) failure mode, though any SW20 with 25+ years of unknown history is a candidate.
Common Symptoms
White smoke from exhaust, worse under throttle/revs
Coolant blown out of overflow during sustained boost
Overheating / temp gauge climbing under hard driving
Steam from driver-side engine bay
Coolant loss with no visible external leak
Oil in coolant or (less commonly) coolant in oil
Bogging or hesitation under acceleration
How to Fix
Replace the head gasket, and while the head is off, have it checked for flatness/skimmed as needed. The strongly preferred upgrade is a metal multi-layer steel (MLS) head gasket (e.g., HKS/Cometic/APEXi for the 3S-GTE) plus new head bolts or ARP head studs to eliminate the TTY-bolt stretch problem. Because access to the 3S-GTE is buried behind the chassis and ancillaries, the timing belt, water pump, and seals should be done at the same time. Address the root cause: proper coolant fill/bleeding and sane boost levels (owners report sustained boost above ~1.2 bar sharply raises failure risk).
What you need to fix it
Only diagnosis- and fitment-reviewed repair parts are linked here.
ATS Racing 3SGTE/5SGTE 1.2 mm MLS head gasket
engine-generation-specific MLS sealing component after teardown measurements confirm it is appropriate Fitment/availability: Select Gen2 3S or Gen3/4/5 3S only after confirming the installed engine; 1.2 mm 3S gasket and up to 88 mm bore …
replacement head-fastener set installed to the ARP preparation, lubricant and torque procedure Fitment/availability: 3SGTE Gen2 through Gen5; kit contains ten studs, washers, nuts and assembly lubricant Fitment/availability: Live direct …
On the 1990-1999 Toyota MR2, sW20s drip oil from several age-related seals: the valve/cam cover gasket, the distributor O-ring and housing, the front cam seals, and the oil-pump shaft seal and housing O-ring. On its own this is a nuisance, but the tight mid-engine bay makes it consequential: oil that runs down onto the alternator (mounted low, in the path of front-seal and distributor leaks) can foul and kill it. In a documented worst case, a distributor leaking badly enough internally can short the alternator and blow the OEM voltage regulator in the trunk. Replacing an oil-soaked alternator in the cramped SW20 bay is a genuinely unpleasant job, so the small leaks are worth chasing before they cascade.
Common Symptoms
Oil drips/spots under the car and on the alternator area
Burning-oil smell from hot exhaust/turbo
Oil pooling near the distributor or front of engine
Charging fault or dead alternator after prolonged leaking
Blown OEM voltage regulator (severe distributor leak)
How to Fix
Identify the source(s) with the engine cleaned and UV dye if needed: cam-cover gasket and distributor O-ring are cheap, common culprits; front cam seals and oil-pump seals are more involved. Best practice is to renew the oil-pump shaft seal, housing O-ring, and cam seals during a timing-belt job when access is already open. If the alternator has been oil-contaminated, clean or replace it and confirm the voltage regulator is healthy.
What you need to fix it
Only diagnosis- and fitment-reviewed repair parts are linked here.
Prime MR2 3SGTE valve-cover gasket set
replace proven 3S-GTE cam-cover leakage Fitment/availability: Select Gen2 for 1991-1995 USDM/1990-1993 JDM 3S-GTE or Gen3 for 1994-1999 JDM 3S-GTE; confirm engine generation Fitment/availability: Live direct product page showing Add to C…
Toyota 19127-74040 and 90099-14090 distributor body O-ring and packing set
repair confirmed external or internal distributor oil leakage on the 3S-GTE branch Fitment/availability: 1991-1999 MR2 3S-GTE Gen2/Gen3 distributor; includes the body O-ring and packing seal Fitment/availability: Live direct product page…
replace proven valve-cover leakage on the U.S. naturally aspirated 5S-FE branch Fitment/availability: 1991-1995 Toyota MR2 2.2L 5S-FE; includes spark-plug tube seals Fitment/availability: Live direct product page showing Add to Cart and …
Prime MR2 timing-component and front-seal kit for 3SGTE
renew confirmed or due front seals while the correct 3S engine's timing drive is already open Fitment/availability: Select Gen2 for 1991-1995 USDM/1990-1993 JDM MR2 Turbo or Gen3 for 1994-1999 JDM MR2/1994-1997 3S-GE; includes cam/crank …
On the 1990-1999 Toyota MR2, because the SW20 is mid-engined with the radiator up front, coolant travels the full length of the car through long metal pipes running under the floor. These pipes, plus the bypass line and the water neck/filler-neck assembly, corrode from the inside out. The system mixes many dissimilar metals in contact with coolant (steel, stainless, aluminum, copper, brass, cast iron), which sets up galvanic/electrolytic corrosion so the more-reactive metal is sacrificed. Old or unchanged coolant loses its corrosion inhibitors and accelerates the process. Rust flakes can break off internally and circulate through the cooling system, and pinholes/perforation eventually cause coolant loss and overheating, which then endangers the head gasket. This affects all SW20 variants and is a top pre-purchase inspection item.
Common Symptoms
Gradual coolant loss / needing to top up
Overheating or erratic temperature
Rust particles or metal flakes visible in coolant
Weeping or crusty corrosion on underbody pipes and filler neck
Air locks / hard-to-bleed cooling system
How to Fix
Inspect the full length of the underbody pipes, the bypass line, and the filler/water neck for scale, weeping, and perforation. Replace corroded sections; many owners upgrade to stainless-steel or fabricated pipes for longevity. Flush the system thoroughly if rust particles are present. Prevent recurrence by changing coolant on Toyota's ~2-year interval with proper mixture, and bleed the system correctly to avoid air locks (a mis-bled SW20 will air-lock and overheat).
What you need to fix it
Only diagnosis- and fitment-reviewed repair parts are linked here.
Toyota 87208-17080 heater water pipe C
Toyota MR2 SW20/SW21 with 3S-GTE or 5S-FE; verify VIN and that heater-water pipe C is the failed branch Fitment/availability: Live direct product page showing Add to Cart and a 1-3 b
On the 1990-1999 Toyota MR2, the second-generation MR2 (SW20, 1990-1999) is well-known for snap oversteer, particularly during mid-corner lift-off or abrupt throttle changes. The mid-engine layout with short wheelbase and rear weight bias causes the rear end to break loose suddenly when weight transfers forward during deceleration. Toyota revised the rear suspension geometry in 1993 (Rev 2) and again in 1994 (Rev 3) to improve predictability, but the inherent characteristic remains. Proper driving technique is essential.
Common Symptoms
Sudden rear-end breakaway during cornering
Loss of control during mid-corner throttle lift
Excessive oversteer in wet conditions
Unpredictable handling at the limit
How to Fix
First inspect tire condition and pressures, then verify the car has a matched performance tire setup with adequate rear grip; many SW20 handling problems are worsened by stagger mismatch, old tires, worn rear toe-control arm bushings, bad struts, or incorrect alignment. Perform a full suspension inspection and 4-wheel alignment, setting rear toe slightly in for stability and correcting any worn ball joints, bushings, strut inserts, or damaged links; on early 1991-1992 cars, the best fix is updating to the later 1993+ rear suspension geometry components/subframe where practical, or at minimum rebuilding the rear suspension to later-spec alignment settings. Typical costs are about $150-$300 for alignment, $400-$1,200 for tires, and $800-$2,500+ if replacing multiple rear suspension parts or converting to later components. After repairs, the driver should avoid abrupt mid-corner lift-off and use smooth throttle inputs, especially in wet conditions, because this is also a vehicle dynamics characteristic rather than a single failed part.
What you need to fix it
Only diagnosis- and fitment-reviewed repair parts are linked here.
KYB Excel-G 365064 front strut insert
restore front damping only when inspection proves worn front inserts Fitment/availability: Select 1991-1995 MR2; stock-height or lightly lowered SW20, one insert per side and two required for the front axle Fitment/availability: Live dir…
restore rear damping only when inspection proves worn rear inserts Fitment/availability: Select 1991-1995 Toyota MR2; stock-height or lightly lowered SW20, one insert per side and two required for the rear axle Fitment/availability: Live…
On the 1990-1999 Toyota MR2, the SW20's ignition igniter (ignition control module) and distributor pickup are recognized failure points, especially intermittently and when hot. The igniter is fed the IGT signal from the ECU and switches the coil; the distributor houses the pickup that tells the ECU the engine is turning. When the igniter fails it often does so without setting a code, and typically acts up once the engine is hot-soaked, producing intermittent or total loss of spark and stalling/no-start. Related no-spark causes on these cars include the coil, distributor pickup, corroded/loose connectors and grounds at the igniter/coil/distributor, and (less often) wiring. Because failures are intermittent and code-free, they are frequently misdiagnosed.
Common Symptoms
Intermittent no-spark, often when engine is hot
Cranks but won't start
Sudden stalling then restarts after cooling
No fault code despite ignition failure
Rough running or cut-out under load
How to Fix
Diagnose systematically: inspect and reseat the connectors and grounds at the igniter, coil, and distributor; confirm 12V at the coil/igniter power feed and test for spark and IGT signal. Replace a failed igniter (ignition module) with a known-good OEM/quality unit; replace the coil or distributor pickup if those test bad. Repair corroded ignition wiring/connectors. Because the igniter can fail intermittently when hot, a hot-condition test (or chilling the igniter with freeze spray during a no-start, or substituting a known-good part) is often the definitive check.
What you need to fix it
Only diagnosis- and fitment-reviewed repair parts are linked here.
Prime MR2 replacement ignition coil for 3S-GTE/early 5S-FE branches
replace a coil that fails the engine-specific electrical and spark tests Fitment/availability: Select the stated 1991-1992 Gen2 3S-GTE or 1993-1995 USDM/1992-1999 JDM 3S-GTE and 1991-1992 5S-FE branch only after coil testing Fitment/avai…
According to Au7o's research across NHTSA recalls, manufacturer TSBs, and owner forum reports, the 1999 Toyota MR2 has 7 documented issues. The most frequently reported are: Structural Rust: Sills, Rear Arches, and Rear Subframe ('Cancer Bars'), Underbody Coolant Pipe Corrosion (Mid-Engine Cooling Lines), Snap Oversteer Under Lift-Off (SW20). Of these, 4 are rated critical and should be addressed promptly.
Is the Toyota MR2 reliable?
The 1999 Toyota MR2 has 7 known issues compiled from NHTSA recalls, manufacturer TSBs, and owner forum reports. 4 issues are rated critical: Structural Rust: Sills, Rear Arches, and Rear Subframe ('Cancer Bars') and Underbody Coolant Pipe Corrosion (Mid-Engine Cooling Lines) and Snap Oversteer Under Lift-Off (SW20) and 3S-GTE Turbo Head Gasket Failure Under Boost. Prospective buyers should inspect for these issues and factor potential repair costs into their purchase decision. Regular maintenance following the manufacturer's schedule helps prevent many common problems.
How much does it cost to fix common Toyota MR2 problems?
Repair costs for known Toyota MR2 issues range from $50 to $5,000, depending on the specific problem and whether you choose DIY or professional repair. The most critical issue, Structural Rust: Sills, Rear Arches, and Rear Subframe ('Cancer Bars'), typically costs $600-$5,000 to repair. Au7o provides step-by-step DIY maintenance guides that can help reduce repair costs.
What is the 1990-1999 Toyota MR2 Structural Rust: Sills, Rear Arches, and Rear Subframe ('Cancer Bars')?
The SW20 body rusts in predictable, structurally important places. Sound-deadening foam packed into the rear quarters behind the seats traps moisture and rots the rear sills from the inside. The rear wheel arches and inner arches corrode, especially where road salt isn't washed o… Repairs typically run $600-$5,000. Severity: high.
What is the 1990-1999 Toyota MR2 Underbody Coolant Pipe Corrosion (Mid-Engine Cooling Lines)?
Because the SW20 is mid-engined with the radiator up front, coolant travels the full length of the car through long metal pipes running under the floor. These pipes, plus the bypass line and the water neck/filler-neck assembly, corrode from the inside out. The system mixes many d… Repairs typically run $500-$2,200. Severity: high.
What is the 1990-1999 Toyota MR2 Snap Oversteer Under Lift-Off (SW20)?
The second-generation MR2 (SW20, 1990-1999) is well-known for snap oversteer, particularly during mid-corner lift-off or abrupt throttle changes. The mid-engine layout with short wheelbase and rear weight bias causes the rear end to break loose suddenly when weight transfers forw… Repairs typically run $300-$1,500. Severity: high.
What is the 1990-1999 Toyota MR2 3S-GTE Turbo Head Gasket Failure Under Boost?
The turbocharged 3S-GTE is prone to head gasket failure, particularly on cars run at elevated boost or with a neglected cooling system. The engine's design works against it: narrow head-gasket 'lands' around the combustion chambers, large coolant jackets, a factory paper/composit… Repairs typically run $1,500-$3,800. Severity: high.
What is the 1990-1999 Toyota MR2 Chronic Oil Leaks (Cam Cover, Distributor O-Ring, Cam/Oil-Pump Seals) Killing the Alternator?
SW20s drip oil from several age-related seals: the valve/cam cover gasket, the distributor O-ring and housing, the front cam seals, and the oil-pump shaft seal and housing O-ring. On its own this is a nuisance, but the tight mid-engine bay makes it consequential: oil that runs do… Repairs typically run $150-$900. Severity: medium.
What is the 1990-1999 Toyota MR2 Ignition Igniter / Distributor No-Spark Failure?
The SW20's ignition igniter (ignition control module) and distributor pickup are recognized failure points, especially intermittently and when hot. The igniter is fed the IGT signal from the ECU and switches the coil; the distributor houses the pickup that tells the ECU the engin… Repairs typically run $150-$700. Severity: medium.
What is the 1990-1999 Toyota MR2 T-Bar Roof Water Leaks and Pop-Up Headlight Motor Faults?
Two age-related annoyances plague SW20s. First, on glass T-bar (T-top) cars the roof seals leak with age: the rubber shrinks and hardens, so the seals on the body and the T-top panels pull apart at the vertical join near the door-glass opening, letting water into the cabin (which… Repairs typically run $50-$1,200. Severity: low.
Content on this page was compiled with AI assistance using NHTSA complaints, TSBs, owner reports, and public automotive data. While we strive for accuracy, this information may contain errors. Always verify repair procedures and specifications with your vehicle's service manual or a qualified mechanic.
